NCBI NCBI DCODE.org Comparative Genomics Developments
NCBI DCODE.org Comparative Genomics Developments
Tools

   ECR Browser
   ECRbase

   SNPDelScore
   CAPE

   Mulan
   zPicture
   eShadow

   CLARE
   DiRE
   SynoR

   multiTF
   rVista 2.0

PUBLICATIONS

ABOUT US

 Causal noncoding variants
SNPDelScore -- Combining multiple methods developed by the community to predict causal noncoding variants.
CAPE -- Predicting causal noncoding variants.

 Regulation of co-expressed genes
CLARE -- Prediction of regulatory motifs and motif combinations in a set of co-functional enhancers.
DiRE -- Identification of proximal and Distant Regulatory Elements of co-regulated genes.
SynoR -- Prediction of synonymous regulatory elements in vertebrate genomes.

 Whole genome alignments
ECR Browser -- Evolutionary conservation of multiple genomes. Identification and sequence analysis of regulatory elements.
Genome Alignment in ECR Browser -- Align your FASTA nucleotide sequence to a genome of choice.

 Multiple and pairwise sequence alignments
Mulan -- Full multiple sequence alignment. [Interactive conservation profiles, phylogenetic trees, etc.]
zPicture -- Stacked pairwise and multiple sequence alignment.
eShadow -- Phylogenetic shadowing of closely related species.

 Identification of conserved transcription factor binding sites (cTFBS)
Excluding up to 95% false positive TFBS predictions using sequence conservation as a filter.
multiTF -- cTFBS in multiple sequence alignments.
rVista 2.0 -- cTFBS in pairwise alignments.



Dcode.org Comparative Genomics Developments
NLM / NCBI / CBB
The National Institutes of Health (NIH)
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