Databases
- Link to the folder for group database:
/panfs/pan1.be-md.ncbi.nlm.nih.gov/devdcode/common/database
- A basic readme file for using the mysql database is in the following link:
- New tables
| Table/directory name | Database name | Description | |
|---|---|---|---|
| enhancerActiveWeakMergedPrunedAllTissue | hg19 | all active (no flank) and weak enhancers from Roadmap Project. Neighboring enhancers are merged and longer enhancers (>3kbp) are removed | |
| /net/intdev/devdcode/common/CRISPRi_RNA-seq | GRCh38 | CRISPRi RNA-seq Gene expression data for 77 target TFs plus three controls from the ENCODE project (https://www.encodeproject.org/) | |