Ovcharenko Group Wiki

Group Meetings

Wednesdays at 10:00am, the 6th floor conference room

Papers to present:

Borzoi (https://www.biorxiv.org/content/10.1101/2023.08.30.555582v1.full.pdf)
"Increased enhancer–promoter interactions during developmental enhancer activation in mammals" Nature Genetics. Kvon Lab
https://www.nature.com/articles/s41467-024-55513-2
UniversalEPI: Harnessing Attention Mechanisms to Decode Chromatin Interactions in Rare and Unexplored Cell Types
https://www.biorxiv.org/content/10.1101/2024.11.22.624813v1
Evaluation of deep learning approaches for high-resolution chromatin accessibility prediction from genomic sequence
https://www.biorxiv.org/content/10.1101/2025.03.01.641000v1.abstract
Deep learning-based models for preimplantation mouse and human embryos based on single-cell RNA sequencing
https://www.nature.com/articles/s41592-024-02511-3#Sec19
SHAP: https://shap.readthedocs.io/en/latest/

Project discussions (Monday meetings)

• Monday, 9:00 am - Xiaoqin
• Monday, 9:30 am - Jaya
• Monday, 10:00 am - Di

Group Members

• Di Huang
• Xiaoqin Huang
• Sanjarbek Hudaiberdiev
• Gaetano Manzo
• Jaya Srivastava
• Ivan Ovcharenko

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