Group Meetings
Wednesdays at 10:00am, the 6th floor conference room
| Presentation date | Progress Report | Journal Club |
|---|
| 2025 | |||
|---|---|---|---|
| September | |||
| 9/10 | - | Jaya: Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders | |
| 9/17 | - | - | |
| 9/24 | - | Xiaoqin: AlphaGenome (https://www.biorxiv.org/content/10.1101/2025.06.25.661532v1) | |
| October | |||
| 10/1 | - | - | |
| 10/8 | - | Di: Capture C MPRA (https://www.biorxiv.org/content/10.1101/2025.06.11.658967v1) |
Papers to present:
Borzoi (https://www.biorxiv.org/content/10.1101/2023.08.30.555582v1.full.pdf)
"Increased enhancer–promoter interactions during developmental enhancer activation in mammals" Nature Genetics. Kvon Lab
https://www.nature.com/articles/s41467-024-55513-2
UniversalEPI: Harnessing Attention Mechanisms to Decode Chromatin Interactions in Rare and Unexplored Cell Types
https://www.biorxiv.org/content/10.1101/2024.11.22.624813v1
Evaluation of deep learning approaches for high-resolution chromatin accessibility prediction from genomic sequence
https://www.biorxiv.org/content/10.1101/2025.03.01.641000v1.abstract
Deep learning-based models for preimplantation mouse and human embryos based on single-cell RNA sequencing
https://www.nature.com/articles/s41592-024-02511-3#Sec19
SHAP: https://shap.readthedocs.io/en/latest/
!!Project discussions (Monday meetings)
- Monday, 9:00 am - Xiaoqin
- Monday, 9:30 am - Jaya
- Monday, 10:00 am - Di
!!Group Members
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